Hey friendBOMBER, there are times, usually when the cup is in shadow from a tree or the like, that it can be difficult to find the hole from that distance. Couple of things that can help you read your putt/spot the cup.
1) If you use the teleport to ball feature, the cup is always in the center of the green grid lines (assuming you didn't turn those off) in line with your ball.
2) You can free teleport around the green to better read any break(s) the green may hold as well as the position of the cup.
Perhaps having an option in the settings for manual pin removal would alleviate this issue, however, our goal was to create a realistic VR golfing experience, keeping people on an even playing field. We made the decision to auto-remove the pin to prevent users from using the pin as a sort of backboard, a means to make putting easier and removing the finesse required to give a putt just the right amount of weight.